State-of-the-Art AI for Microscopy

Microscopy Data
Analysis at Scale

Browser-based platform for microscopy data visualization and AI-powered analysis. Access state-of-the-art deep learning models for segmentation, tracking, and quantification of biological data. No coding. No expensive licenses. No fragmented workflows.

AI-Powered Segmentation • Tracking • Analysis 1 2 3 4 5

From Upload to Publication in 3 Steps

Designed for speed. Built for reproducibility.

1

Upload Your Data

Drag and drop microscopy files directly into your browser. Files are automatically converted for efficient streaming and metadata is extracted. Terabyte-scale datasets ready in minutes.

2

Create Workflow

Connect visual nodes—denoising, segmentation, tracking, quantification—without writing code. Each step runs on cloud GPUs. Iterate rapidly with instant previews.

3

Export & Share Results

Download publication-ready figures, CSV data, and annotated videos. Share workspaces with collaborators. Every analysis is versioned and reproducible.

From Images to Insights in Minutes, Not Months

Automated analysis pipelines that scale with your research. From developmental biology to drug screening, CellWorkflow accelerates discovery.

50×
Faster
10k+
Cells

Cell Migration & Tracking

Track thousands of cells across extended time-lapses. CellWorkflow generates complete lineage trees in under an hour—replacing weeks of manual annotation.

4TB+
Datasets

Light-Sheet & Organoids

Explore terabyte-scale light-sheet datasets directly in the browser with zero lag. 3D visualization enables real-time exploration of complex developmental processes.

384
Wells
90%
Time Saved

High-Content Screening

Standardize drug screening analysis across multi-well plates. Reproducible workflows ensure consistent results across experiments and research groups.

All the Tools You Need for Biological Research

No expensive licenses. No workstation upgrades. No waiting hours for results.
Just open your browser and start analyzing.

3D Volume View Channels GFP - Cytoplasm ON DAPI - Nuclei ON mCherry - Markers OFF Dimensions 45 Z-Slices 120 Timepoints Timeline Frame 60 / 120 Play Export
Workflow Editor LOAD DATASET experiment_001.nd2 2048 × 2048 × 45 × 120 DENOISE N2V Model Strength: 0.8 SEGMENT Cellpose - cyto2 Diameter: auto TRACK Ultrack Max gap: 3 frames QUANTIFY Morphology + Intensity 18 features 70% Complete Run All
Fine-tune Model No Code Required BASE MODEL Cellpose - cyto2 TRAINING DATA Drop images here or browse 12 images uploaded ANNOTATIONS 247 labeled cells EPOCHS 50 ~15 min Training Progress 60% Training... VALIDATION METRICS 0.94 IoU Score 0.91 F1 Score 98.2% Cell Detection Start Fine-tuning Available Models C Cellpose Cell & nuclei segmentation S StarDist Star-convex object detection S SAM Segment Anything Model U Ultrack Multi-hypothesis tracking N N2V Denoising Self-supervised denoising + More models coming soon

Universal Format Support

Import TIFF, OME-TIFF, ND2, CZI, LIF and more with automatic conversion.

3D/4D Visualization

Render terabyte-scale datasets directly in your browser with Z-stacks and time-lapses.

Advanced Cell Tracking

Automatic lineage reconstruction handling divisions, merges, and complex behaviors.

Scalable Cloud Compute

GPU instances scale on-demand to process datasets beyond local hardware capacity.

Real-Time Collaboration

Share workspaces with your team. See changes instantly with live synchronization.

Quantification & Export

Extract morphology, intensity, and tracking metrics. Export to CSV or interactive charts.

Why CellWorkflow?

Beyond the technology—real benefits for your research.

No hardware limitations

Process terabyte-scale datasets without upgrading your workstation.

No software licenses

Browser-based access eliminates expensive per-seat licensing.

Centralized data management

All datasets, workflows, and results in one accessible location.

Unified analysis pipeline

No more switching between fragmented tools and manual file transfers.

10× faster analysis

From weeks of manual work to hours of automated processing.

Reproducible results

Every analysis is versioned and shareable for transparent science.

Simple, Transparent Pricing

From individual researchers to enterprise teams. Start free, scale as you grow.

Monthly Yearly

Free

Try CellWorkflow with no commitment

$0
forever
  • 1 user
  • 100 GB storage
  • 1 workflow
  • All models & tools
  • Standard compute
  • Email support

Inactive accounts deleted after 30 days

Request Access

Starter

For small labs getting started

$2,400
per year
  • 3 users, shared workspace
  • 1 TB storage
  • 5 workflows
  • 200 GPU hours included
  • Priority compute
  • Email support
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Enterprise

For pharma, biotech & CROs

Custom
tailored to your needs
  • Unlimited users & storage
  • Unlimited workflows
  • Dedicated GPU capacity
  • Custom SLA
  • SSO integration
  • On-premise options available
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Ready to Transform Your Research?

Start analyzing your microscopy data today. We're here to help you get the most out of CellWorkflow—reach out if you have questions or want to explore a collaboration.